CoffeaBase

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CoffeaBase

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- Accessions
- Markers
- Images
- People
- FAQ
- FTP site
Analyze
- Sequence Analysis
- BLAST
- Other
- Ontology Browser
Maps
- Genome Browser
- Coffea arabica reference genome
- Coffea canephora reference genome
- Coffea eugenioides reference genome
- Genetic Maps
- Coffea arabica
- Coffea canephora
- Gene Curation
- Apollo Genome Editor
About
- About
- Contact
- Cite Coffeabase
- Manual (cassavabase)
- Help
- FAQ
- Forum

Advanced

CoffeaBase Help

CoffeaBase is a database for the genomes and phenotypes of the Coffea genus.

CoffeaBase is implemented in the same software as the Solgenomics site and other BreedBase breeding sites. Many functionalities are not yet activitated.

FAQ

For frequently asked questions, see the FAQ page.

SlideShare

SlideShare has a collection of slide decks about the related SGN and CassavaBase databases.

Your Lists

Public Lists

List Contents

List Validation Report: Failed

Elements not found:

Optional: Add Missing Accessions to A List

Mismatched case

Click the Adjust Case button to align the case in the list with what is in the database.

Multiple mismatched case

Items listed here have mulitple case mismatches and must be fixed manually. If accessions need to be merged, contact the database directly.

List elements matching a synonym

Multiple synonym matches

Multiple synonym matches have to be resolved manually. Contact database administrators if necessary.

Fuzzy Search Results

Synonym Search Results

Create a New List from Unique Names:

Available Seedlots

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Create a New List from Selected Seedlots:

Manage Seedlots

Your Datasets

Public Datasets

Dataset Contents

Dataset Validation Failed

Elements not found:

Your Calendar

Having trouble viewing events on the calendar?
Are you associated with the breeding program you are interested in viewing?

Calendar Permissions

Add New Event

Project:

Event Type:

Start:

End:

Description:

Web URL:

http://www.

Event Info

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL:

Edit Event

Project:

Event Type:

Start:

End:

Description:

Web URL:

Login

Forgot Username

If you've forgotten your username, enter your email address below. An email will be sent with any account username(s) associated with your email address.

Email Address

Reset Password

To reset your password, please enter your email address. A link will be sent to that address with a link that will enable you to reset your password.

Email Address

Create New User

Notice

Before creating a new account, please check if you already have an account using the directory search.
A link will be emailed to you. Please click on it to activate the account.
All fields are required.

First Name:

Last Name:

Organization:

Username:

Username must be at least 7 characters long.

Password:

Password must be at least 7 characters long and different from your username.

Confirm Password:

Password must be at least 7 characters long and different from your username.

Email Address:

An email will be sent to this address requiring you to confirm its receipt to activate your account.

Working

Progress

CoffeaBase is located at the Boyce Thompson Institute.